Anshul Kundaje
Genomics, Machine Learning, Statistics, Big Data and Football (Soccer). Views are my own and do not reflect my employers
Last synced from Twitter 81d ago
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CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
CHESS is an algorithm that compares chromatin contact maps and identifies differential features. It can analyze interspecies syntenic regions and three-dimensional changes caused by genetic perturbation.
Hate Wokeness? Vote Biden.
Removing the president from office should be a top priority for any voter who is genuinely concerned about the rise of illiberal forces.
A Single-Cell Tumor Immune Atlas for Precision Oncology
The tumor immune microenvironment is a main contributor to cancer progression and a promising therapeutic target for oncology. However, immune microenvironments vary profoundly between patients and biomarkers for prognosis and treatment response...
Understanding Self-supervised Learning with Dual Deep Networks
We propose a novel theoretical framework to understand self-supervised
learning methods that employ dual pairs of deep ReLU networks (e.g., SimCLR,
BYOL). First, we prove that in each SGD update of SimCLR, the weights at each
layer are updated by a...
Understanding self-supervised and contrastive learning with “Bootstrap Your Own Latent” (BYOL)
Summary Unlike prior work like SimCLR and MoCo, the recent paper Bootstrap Your Own Latent (BYOL) from DeepMind demonstrates a state of the art method for self-supervised learning of image representations without an explicitly contrastive loss...
BYOL works even without batch statistics
Bootstrap Your Own Latent (BYOL) is a self-supervised learning approach for
image representation. From an augmented view of an image, BYOL trains an online
network to predict a target network representation of a different augmented
view of the same...
GEO Accession viewer
NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
Single-cell chromatin profiling of different brain regions identifies cell-type-specific regulatory elements, and helps to predict functional SNPs for Alzheimer’s and Parkinson’s diseases.
Superheroes of Deep Learning Vol 1: Machine Learning Yearning
Full PDFs free on GitHub. To support us, visit Patreon. Related Posts Hope Returns to
Pranav Rajpurkar
PhD Researcher at Stanford building artificial intelligence technologies for medical applications.
Building in silico research models to accelerate discovery
Machine learning and deep learning in particular have a growing influence on everything from how we shop to how we drive—or are driven by self-driving cars. Anshul Kundaje, Ph.D., assistant professor of genetics and computer science at Stanford...
Anshul Kundaje
This is a bit of old news. I hadn't realized that this interview with HUGO from 2019 was out. Anyway, just in case u wonder wtf I keep tweeting & retweeting (besides #DumpCovidTrump and #GGMU), this might give u a high level overview of my lab's research
84d
google-research/google-research
Google Research. Contribute to google-research/google-research development by creating an account on GitHub.
Contrastive Learning of General-Purpose Audio Representations
We introduce COLA, a self-supervised pre-training approach for learning a
general-purpose representation of audio. Our approach is based on contrastive
learning: it learns a representation which assigns high similarity to audio
segments extracted...
A primer on model-guided exploration of fitness landscapes for biological sequence design
Machine learning methods are increasingly employed to address challenges
faced by biologists. One area that will greatly benefit from this
cross-pollination is the problem of biological sequence design, which has
massive potential for therapeutic...
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This year’s general election ballot presents the voter with a dilemma. We have wrestled with this year’s choices, as we imagine many voters have. Up and down the ticket we
Broad transcriptional dysregulation of brain and choroid plexus cell types with COVID-19
Though SARS-CoV-2 primarily targets the respiratory system, it is increasingly appreciated that patients may suffer neurological symptoms of varied severity. However, an unbiased understanding of the molecular processes across brain cell types that...
A More Prosperous Future for the Indian American Community: Op Ed by Vice President Biden for India-West
Four years ago in November, one of the last events I hosted at the Vice President’s residence was a Diwali reception. Here I was, an Irish Catholic Vice President opening