Davis McCarthy
Head, Bioinformatics and Cellular Genomics Lab, @SVIResearch and @MelbIntGen. @nhmrc Early Career Fellow. Stats, bioinformatics, genomics, single-cell, cricket
Last synced from Twitter 126d ago
Integrated Single Cell Atlas of Endothelial Cells of the Human Lung
Background: Despite its importance in health and disease, the cellular diversity of the lung endothelium has not been systematically characterized in humans. Here we provide a reference atlas of human lung endothelial cells (ECs), to facilitate a...
Melbourne Data Analytics Platform (MDAP) | Collaboration. Computing. Research Impact.
We are a team of Research Data Specialists and Research Data Stewards working to enable data-intensive research across the disciplines.
PhD Opportunities 2021/22 | AI4Health
Two new PhD projects are being advertised to join my group at the University of Manchester for the academic year 2021/22. Applications are due by 15 November 2020 for the MRC Doctoral Training Programme. Successful applicants will receive funding...
Single-Cell Multiomics Sequencing Reveals Prevalent Genomic Alterations in Tumor Stromal Cells of Human Colorectal Cancer
Zhou et al. provide evidence for the prevalence of somatic copy number alterations
in fibroblasts, immune cells, and endothelial cells in both colorectal cancer and
normal tissues. The proportions of aneuploid fibroblasts in tumors are much...
Details : POSTDOCTORAL RESEARCH FELLOW (4 POSITIONS) : The University of Melbourne
Careers at The University of Melbourne
Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters
Cell clones in lineage-tracing studies can be isolated for functional experiments.
Learning distance-dependent motif interactions: an interpretable CNN model of genomic events
In most biological studies, prediction is used primarily to validate the model; the real quest is to understand the underlying phenomenon. Therefore, interpretable deep models for biological studies are required. Here, we propose HyperXPair (the...
ADG Awards winners announced at virtual ceremony this evening
• More than 50% of the Awards won by female directors
Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory
CD4+ T cells are critical for effective responses to infection with the malaria parasite. Haque and colleagues use single-cell RNA sequencing and computational modeling to track T cell memory development during experimental Plasmodium infection of...
The Design Principles of Discrete Turing Patterning Systems
The formation of spatial structures lies at the heart of developmental processes. However, many of the underlying gene regulatory and biochemical processes remain poorly understood. Turing patterns constitute a main candidate to explain such...
Online Seminar – November 2020 – Professor Peter Bühlmann
Event Time: TBD Presenter: Professor Peter Bühlmann, ETH Zürich Biography: ETH Zürich & Wikipedia Title: Invariance, Causality and Robustness in Statistical Learning Structure: 45 minutes seminar with 15 minutes question time Registration: please...
F1000Research Article: TreeSummarizedExperiment: a S4 class for data with hierarchical structure.
Read the latest article version by Ruizhu Huang, Charlotte Soneson, Felix G.M. Ernst, Kevin C. Rue-Albrecht, Guangchuang Yu, Stephanie C. Hicks, Mark D. Robinson, at F1000Research.
Splat pop by azodichr · Pull Request #106 · Oshlack/splatter
Updated pull request following Luke's instructions for submitting a PR from Luke's splatPop branch.
Systematic benchmarking of tools for CpG methylation detection from Nanopore sequencing
DNA methylation plays a fundamental role in the control of gene expression and genome integrity. Although there are multiple tools that enable its detection from Nanopore sequencing, their accuracy remains largely unknown. Here, we present a...
Slide: weitrix: calibrate precision weights for diverse data types in a matrix, explore and test weighted or sparse data has been published by F1000Research.
Read this work by Harrison P, at F1000Research.
Why the Government is telling poor kids to dream poorer dreams
Last Tuesday was the day that broke a lot of university workers.
Faculty Positions in Cellular Genetics | Nature Careers
Faculty Positions in Cellular Genetics, with Wellcome Trust Sanger Institute. Apply Today.