erik m volz
Mathematical epidemiology, evolution of infectious diseases
Thought Leader
#37 Infectious Disease
Last synced from Twitter 14d ago
COVID-19 epidemic severity is associated with timing of non-pharmaceutical interventions
medRxiv 41d 3 tweets
Background: Unprecedented public health interventions including travel restrictions and national lockdowns have been implemented to stem the COVID-19 epidemic, but the effectiveness of non-pharmaceutical interventions is still debated. International...
Additive uncorrelated relaxed clock models for the dating of genomic epidemiology phylogenies
OUP Academic 91d 1 tweets
Abstract. Phylogenetic dating is one of the most powerful and commonly used methods of drawing epidemiological interpretations from pathogen genomic data. Buil
An integrated national scale SARS-CoV-2 genomic surveillance network
The Lancet Microbe 149d 5 tweets
The Coronavirus Disease 2019 (COVID-19) Genomics UK Consortium (COG-UK) was launched in March, 2020, with £20 million support from UK Research and Innovation, the UK Department of Health and Social Care, and Wellcome Trust. The goal of this...
Vacancies
Warwick.ac.uk 154d 1 tweets
index.utf8
Sdwfrost.github.io 162d 1 tweets
COVID-19 reports
Imperial College London 213d 41 tweets
30 March 2020 - Imperial College London‌
Science Matters: Let's Talk About COVID-19 | Coursera
Coursera 244d 9 tweets
Learn Science Matters: Let's Talk About COVID-19 from Imperial College London. Welcome to the Imperial College London Science Matters, Let's Talk series exploring the coronavirus disease (COVID-19) epidemic. On January 30th, the World Health ...
News / Wuhan Coronavirus
Imperial College London 286d 74 tweets
17 January 2020 - Imperial College London‌
Recent and Rapid Transmission of HIV among People who Inject Drugs in Scotland Revealed through Phylogenetic Analysis | The Journal of Infectious Diseases | Oxford Academic
OUP Academic 955d 1 tweets
Harm reduction has dramatically reduced HIV incidence among people who inject drugs (PWID). In Glasgow, Scotland, <10 infections/year have been diagnosed among PWID since the mid-90s. However, in 2015 a sharp rise in diagnoses was noted among PWID:...
1
erik m volz A duo of new papers in JID on HIV phylodynamics in the UK 1) 2) (yours truly and ) Also with commentary 1) 2) Jared M Baeten 955d
Molecular Epidemiology of HIV-1 Subtype B Reveals Heterogeneous Transmission Risk: Implications for Intervention and Control | The Journal of Infectious Diseases | Oxford Academic
OUP Academic 955d 1 tweets
BackgroundThe impact of HIV pre-exposure prophylaxis (PrEP) depends on infections averted by protecting vulnerable individuals as well as infections averted by preventing transmission by those who would have been infected if not receiving PrEP....
1
erik m volz A duo of new papers in JID on HIV phylodynamics in the UK 1) 2) (yours truly and ) Also with commentary 1) 2) Jared M Baeten 955d
Quantifying the aftermath: Recent Outbreaks among People who in- ject Drugs and the Utility of Phylodynamics | The Journal of Infectious Diseases | Oxford Academic
OUP Academic 955d 1 tweets
1
erik m volz A duo of new papers in JID on HIV phylodynamics in the UK 1) 2) (yours truly and ) Also with commentary 1) 2) Jared M Baeten 955d
Amplifying the Population Health Benefits of PrEP for HIV Prevention | The Journal of Infectious Diseases | Oxford Academic
OUP Academic 955d 1 tweets
© The Author(s) 2018. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: [email protected] prophylaxis (PrEP) prevents HIV infection. Robust...
1
erik m volz A duo of new papers in JID on HIV phylodynamics in the UK 1) 2) (yours truly and ) Also with commentary 1) 2) Jared M Baeten 955d
Bayesian phylodynamic inference with complex models
bioRxiv 979d 2 tweets
Population genetic modeling can enhance Bayesian phylogenetic inference by providing a realistic prior on the distribution of branch lengths and times of common ancestry. The parameters of a population genetic model may also have intrinsic...
11
erik m volz Pleased to announce our first release of *PhyDyn*, a #beast2 package for phylodynamic epidemiological/ecological modelling. A long time in development with Igor Siveroni . Preprint: Software: 979d
mrc-ide/PhyDyn
GitHub 1135d 2 tweets
PhyDyn: Epidemiological modelling in BEAST
11
erik m volz Pleased to announce our first release of *PhyDyn*, a #beast2 package for phylodynamic epidemiological/ecological modelling. A long time in development with Igor Siveroni . Preprint: Software: 979d
Elsevier: Article Locator
Linkinghub.elsevier.com 1095d 1 tweets
3
erik m volz Evaluating genetic clustering and source attribution methods for HIV surveillance, new with S Le Vue in Epidemics 1095d
The BayesianTools R package with general-purpose MCMC and SMC samplers for Bayesian statistics
Theor Ecol Blog - theoretical ecology 1119d 1 tweets
This is a somewhat belated introduction of a package that we published on CRAN at the beginning of the year already, but I hadn’t found the time to blog about this earlier. In the R environme…
4
erik m volz I've waited a long time for an R package like this! #rstats 1119d
emvolz/rclustnet
GitHub 1127d 1 tweets
rclustnet - Generate a random graph with desired size, clustering coefficient, and degree distribution
1
erik m volz I made a simple R package for generating random networks with a desired level of clustering and degree distribution 1127d
MASCOT: Parameter and state inference under the marginal structured coalescent approximation
bioRxiv 1141d 1 tweets
Motivation: The structured coalescent is widely applied to study demography within and migration between sub-populations from genetic sequence data. Current methods are either exact but too computationally inefficient to analyse large datasets with...
1
erik m volz Improved ancestral state estimation with approximate structured coalescent models. 1141d